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(Jan 2006) Thank you. Elliott Parker ====================================================================
Building a Coherent Web: Using Structure-Building Text and Hypertext To Facilitate Engagement and Understanding of News About Complex Issues 1 JUNG-SOOK LEE COMPETITION Building a Coherent Web: Using Structure-Building Text and Hypertext To Facilitate Engagement and Understanding of News About Complex Issues. Despite the Web's catapult of content into every corner of the country during the past two decades, many questions remain about how Web browsers navigate and process the potentially overwhelming amount of content. This study utilizes a cognitive approach by synthesizing literature from text comprehension and communication to investigate effects of text and link structure on the Web. From the outset, some scholars argued that the Web's network structure was consistent with human memory (Bieber et al., 1997; Shirk, 1992) and that a comprehender with the ability to control his/her own navigation will learn more than those without the freedom of control (Young, 1996). Others argued that one's interactivity eventually overwhelms the Web user's limited capacity to comprehend content, inhibiting learning (Darken & Sibert, 1996; McDonald & Stevenson, 1996). This claim is supported by data that suggest the brain's limited capacity is quickly exceeded by a continuous string of information (Lang, 2000). Related to the level of user interactivity, some researchers investigated differences between the more passive (or "linear") print medium and the arguably more interactive (or "non linear") Internet structure. To measure interactivity, some researchers recorded the choices that users made as they navigated Web pages and links to other Web pages (Eveland & Dunwoody, 2001; Fredin, 1997; 2 Tremayne, 2004; Tremayne & Dunwoody, 2001). The outcome was that users of more complex sites generally engaged in more interactive behavior and demonstrated greater cognitive elaboration and subsequent recall of content (Tremayne & Dunwoody, 2001). At the same time, others noted effects of familiarity with a Web site on learning. For example, the time needed for users to orient to novel Web sites replaces the time to actually learn content regardless of users' self-reported Web expertise (Dunwoody, 2001). Mixed results from research indicating either significant differences in learning across media (Chen & Rada, 1996) or little difference across media (Dillon & Gabbard, 1998) may explain why some conclude that it is the organizational structure of Web content and reading patterns that are most interesting (Eveland & Dunwoody, 2001). Other studies found varying effects of story structure on readers' suspense, curiosity and enjoyment (Knobloch et al., 2004) and some have correlated message structures with varying emotional responses (Bower & Cohen, 1982; Knobloch et al., 2004; Lang, Newhagen, & Reeves, 1996). Based on this collection of findings, this study explores effects of the relationship of news text with hypertext on the Web. Of particular interest is news about complex issues (such as science and technology), which is exposed to Web users with limited knowledge for the content. This exploration is based on claims that four out of five Americans cannot read and understand the science section of The New York Times (Miller, 2004). The general question therefore, is: How does linearity in text hypertext links affect Web browsers' engagement and understanding (learning) of news about complex issues? 3 Dependent variables focus on the audience's interest in and understanding of the news content. This study has two goals. First, based on theory of text comprehension, a model is proposed for the structure of text and hypertext. Second, an experimental design is utilized to test the structural model by measuring readers' engagement (interest) and understanding (comprehension). Text Comprehension and Message Structure Many journalism educators maintain that the traditional "inverted pyramid" structure – which places the most current details first in a news story – may be particularly important for news on the Web (Stovall, 2002). The pyramid structure can draw scanning users in, encouraging them to read the story (Foust, 2005). While the pyramid structure may be effective in communicating news that is relatively familiar to the audience, some psychologists argue that less familiar news content is a form of discourse processing and not just a direct representation of events (van Dijk, 1983). A story's lead sentence or paragraph is often followed by unrelated details without clarification or explanation resulting in poor coherence in the message (van Dijk, 1983, 1985, 1988). Poor coherence in unfamiliar text may play a major role in how low knowledge readers develop relations of the concepts embedded in the text (Roller, 1990). Based on this theory and research of models of text comprehension such as the Structure Building Framework (Gernsbacher, 1993, 1996; Gernsbacher, 1990a) and the Construction-Integration Model (Kintsch & van Dijk, 1978) this study applies the importance of coherence to the comprehension of news content. 4 Fundamentally, text comprehension models predict that readers begin building a mental representation of the text s/he is reading by first "laying a foundation" and then map incoming information that relates to the foundation (Gernsbacher, 1996). A reader's mental structure is either enhanced by new information that relates to the previously read information or suppressed by less coherent or unfamiliar information (Gernsbacher & Faust, 1991a, 1991b). Readers with limited prior knowledge may be forced to "shift" by developing substructures (Gernsbacher, Varner, & Faust, 1990b). Similarly, the Construction-Integration model (Kintsch & van Dijk, 1978) posits that readers' comprehension depends on the ability to generate associative links within the text to understand the content. This may be particularly important when frequent topic changes in news contribute to discontinuity, forcing readers to unscramble bits of information and then piece those bits together (van Dijk, 1985, 1988). How do these models relate to the structure of news text and hypertext, which may be less coherent? Linearity of news hypertext: axial vs. network Previous studies have found that the relationship between authors and readers suggest that structure of text and hypertext may be an important variable and a significant dimension of difference across media (Eveland et al., 2002; Eveland, Krisztina, & Seo, 2004). This interaction is further complicated by inherit features of the Web itself (i.e. hypertext links) which may further affect coherence of the message. For example, data indicate that the amount of 5 interaction on the Web - as defined by the number of link choices – are on the increase. One analysis of 1,500 Web stories found that the average number of hypertext links to "related content" increased significantly between 1997 and 2001 from three links per story to more than nine links per story (Tremayne, 2004). The increasing trend of links prompts further questions about the relationships between interactivity, news content, coherence and reader knowledge. To pursue these questions, this study proposes to measure understanding of news and the relationship of that knowledge to the coherent structures of hypertext. Engebretsen (2000) adapted previous work by Van Dijk (1988) and others (Figure 1) to theorize the importance of coherence in hypertext links. ______________________________ Insert Figure 1 about here ______________________________ Engebretsen differentiates between an axial link structure and a network link structure (Figure 2). The axial link structure consists of a central main node or "trunk" in which interactive links relate to specific hypertext in the story (left diagram in Figure 2). Each link within the axial structure provides the reader with the option for supplemental information, but the structure does not offer readers access to countless and potentially disorienting other links on the Internet. 6 ______________________________ Insert Figure 2 about here ______________________________ A more common structure of ubiquitous links on the Web is what Engebretsen calls the network link structure (right diagram in Figure 2). Network structures consist of interconnected links that offer readers options more than one link. The network structure can connect Web users to an unlimited number of texts, topics or subjects. The reader chooses which links are accessed and the order in which the links are accessed. Based on the research in cognitive psychology, there are at least two theoretical arguments why the axial structure may provide the strongest support for understanding of complex news story. First, recall from the Structure- Building Framework that incoming information during the reading process triggers activation in a reader's mental structure. Depending on the subsequent information read, a reader's mental structure is either enhanced by new information that relates to previously read information or suppressed by unrelated (i.e. unfamiliar) information. Secondly, according to the Construction-Integration model, relational density is the number of associative links between a first sentence (in a story or paragraph) and subsequent sentences. In a hypertext story, an association in links does not necessarily mean an association in story content (or story coherence). 7 Based on these arguments, the axial structure could more reliably expose low-knowledge readers to coherent information that consistently enhances activation and increases the chances of relational density of subsequent text that is read online. For the network structure to satisfy such a process, each node or link in the story with links would need to provide the relational density for activation of a Web user's appropriate prior knowledge. It is unrealistic to assume that a writer of hypertext news has the time and the resources to verify that such parameters are fulfilled in every link of every story. While some believe that the Internet offers proper use of contextual information because the medium satisfies users who want shorter, fact-driven accounts as well as users wanting context, interpretation, and opinion (Tremayne, 2004), it is not clear how such contextual information might be affected by coherence of links when that information is read by those without prior knowledge of the content. To illustrate the potential complexity of one story, Tremayne (2004) describes a CNN.com news story consisting of two to three paragraphs that present eight different events in the War on Iraq. The story features numerous links to additional material including: (1) the full 800-word story; (2) two other stories related to one of the incidents; (3) two slide shows; (4) five video reports; and (5) two interactive maps. Tremayne notes, "Most of these pages have links to still more related material" (p. 238). Even if the linked material related to the topic of the main story, the question is whether one can assume that the information provides the coherence and explanation to facilitate readers' situational understanding. In other words, is 8 the importance of coherence in text for situational understanding more or less important to hypertext content? Some might respond that the dominant path for textual coherence is always when text is read line by line (Bolter, 1991). Others argue that the popular belief that the Internet's manipulability mass of information can enhance human learning is a myth (Dillon, 1996). "To date, the claims have far exceeded the evidence and few hypertext systems have been shown to lead to either greater comprehension or significantly better performance levels. Clearly, mere exposure to information is not enough for learning to occur, which we really always knew" (p. 31-32). The assumption in this study is that regardless of the number or the content of nodes, the next line of hypertext to be read by a Web user must maintain explanatory structure building if the reader is to be engaged and if the story facilitates application of the reader's prior knowledge. This may be particularly important to news about complex stories about science and technology since studies have found that only 10 percent or less of science stories in 70 U.S. newspapers provided explanations of scientific terms (Long, 1995; Long et al., 1991; Long, 1991). Accordingly: Hypothesis 1: Explanatory structure-building news will produce greater situational interest for stories with coherent axial links than stories in the traditional inverted pyramid structure with network links. Hypothesis 2: Explanatory structure-building news will produce greater situational understanding for stories with coherent axial links than stories in the traditional inverted pyramid structure with network links. 9 The model proposed in this study posits that a reader's interest in reading unfamiliar news content relates to the readers situational understanding for that news (Figure 3). After reading a story's lead sentence or paragraph, the reader's cognitive system is prepared for decisions to either continue or stop reading and interpreting subsequent text. In the case of news on the Internet, where competition for readers' attention can be literally overwhelming, the structural functions of a story's first sentence(s) could mean the difference between a reader continuing or terminating his/her engagement. Coherence of text and hypertext, therefore, should ultimately affect understanding of content. METHOD Design A 2 (text structure) x 2 (hypertext structure) mixed factorial design. The within subjects factor of text structure varied on two levels: original (inverted pyramid) or ESB (explanatory structure building). The between subjects independent variable story type consisted of the two levels axial hypertext vs. network hypertext structure. Participants The sample included 301 undergraduates (73% female, 27% male, 48% sophomores, 28% juniors, mean age = 19.8 years, SD = 1.75) recruited from four courses at a large midwestern university including: an introductory meteorology class, an introductory composition course, and both an introductory and intermediate level journalism course. All students earned extra course credit in exchange for their participation, which was voluntary. 10 Materials The original text from two news stories from the New York Times were used as stories in the traditional inverted pyramid structure (Appendix). The content of story one (health), dated July 24, 2003, covered cancer research and consisted of 642 words. Story two (technology), dated February 12, 2004, reported nanotechnology and consisted of 775 words. These stories were chosen because: (1) Both stories appeared on the New York Times' Web site, but not on the home page; (2) Both stories contained content about science and technology and; (3) Both stories appeared more than six months prior to the study. Operationally, each original New York Times story was modified into the explanatory structure-building format by performing theoretically motivated operations. In accordance with van Dijk's analysis (1988), each paragraph of the story was categorized by content (i.e. history, context, reaction, explanation, etc.) Paragraphs were then rearranged to conform to the concepts of coherence and explanation previous discussed in the literature. For example, number of paragraphs in the health story was reduced from 15 to 13 and "credits" (or details about the researchers and their institutions) and, in the ESB structure, the credits were moved to after the story's situation is explained to the reader. In other words, explanatory text was added to facts there were originally presented in order of importance. After arranging paragraphs for structure building, sentence-level relational density and explanation was analyzed by dividing each sentence into individual "idea units," where each unit conveys a single event, state, or action (Mayer, 1985). Mayer's goal is to manipulate reading strategy by applying operations to 11 target idea units. Specifically, instead of presenting ideas in order of "importance," Mayer manipulates text design to encourage a reader's reflective or elaborative processing. Mayer does this by organizing text around key idea units instead of dropping idea units into a text. According to Mayer, breaking a text into idea units helps to identify which terms and processes need explanation so that problem solving can occur. Idea units may or may not supply the information for low knowledge readers to make appropriate inferences for situational understanding. Therefore, the third and final step is to identify which idea units are "explanative." To illustrate, by using the New York Times health story used in this study, the original contained 814 words and was dissected into 222 idea units. Within those 222 units, 55 scientific terms were identified. Of the 55 scientific terms, only two were accompanied by explanatory text, indicating that approximately 96% of the unexplained scientific terms in the story required low knowledge readers to use prior science knowledge to generate the appropriate inferences for situational understanding. The rewriting of original sentences or paragraphs was minimal. Modified versions of each story appear in appendix. Participants were asked to indicate their level of interest in continuing to read the story after the story's lead paragraph by clicking to select one of five statements representing a scale of 0-6 (with 0 = participant wishing to terminate reading and 6 = participant interested in reading more). After reading the story in its entirety, participants again selected one of five statements to indicate how interesting they found the story (with 0 = not at all interesting and 6 = very interesting). 12 Measurement of situational understanding included a battery of different question types, given the theoretical notion that a situational understanding includes both recall of explicit text base information and free recall or sorting of details requiring reader inferences. Therefore, in addition to 12 true/false questions and a detailed multiple choice question about explicit details presented by the text base, participants were required to apply prior knowledge and generated inferences to accurately sort 15 different terms and processes into contextual categories. So that both stories were approximately the same word length, the last sentences of the nanotechnology story (the longer of the two stories) were removed. Second, two sets of five links (one set representing axial links and the other set network links) were added to both stories. Both sets of links related to the same content within the story except that the network links connected to an external Web site related to the story. Axial links (embedded within the text) connected to separate window that displayed a brief explanation of that particular term. None of the axial links took readers to an external site with additional links. Readers only needed to close the link window to proceed with the main story text. In terms of content, based on comments from study one related to reader interest in the health story, most occurrences of the word "tumor" were changed to either "growth" or "abnormal tissue." There were structural modifications to the texts of either story. 13 Procedure: Approximately two weeks prior to the experiment, participants registered online and completed the same 12 items of civic scientific literacy used in study one plus self-reported levels of interest and levels of familiarity for various types of news, including news about health, technology, sports, and politics. Each online registrant received an E-mail confirming one of six experimental sessions to which they were assigned and a "subject ID" number. Upon arrival at one of two windowless computer labs, each containing twelve identical Macintosh iMAC computers, participants were presented a consent form for signature and told to choose any one of the computer stations to begin. Each consent form included a number corresponding to a numbered menu displayed on each computer. (Each number on the computer menu represented the text version of the stories to be read.) After signing their consent form, each participant read the same on-screen instructions then clicked the menu item indicated on their consent form. Before clicking a second button to begin the experiment, each participant entered their "subject ID number" so that their data could be associated with their online pre-test completed two weeks prior. Each participant was then exposed to the health and technology stories, one in the original (inverted pyramid) structure and the other story in the modified (explanatory structure building) format. To reduce the effects of order, the presentation of stories was counter-balanced. Similar to study one (but on a scale of 0-5), participants indicated their level of interest after reading each story's lead paragraph and after the entire story. After reading both stories, each participant completed an online 14 questionnaire, including how many of the five links the participant clicked in each story and, if clicked, how useful they found the links to be. Identical to study one, participants completed the same sequence of free recall, sorting and true/false questions used in study one with the exception of changes of a few questions to accommodate the shortening of technology story and a final question asking each participant for their cumulative grade point average. After clicking the "submit" button participants were exposed to a "thank you" screen, the option of reading a debriefing of the experiment if desired, and instructions to please quietly leave the lab. Results As a manipulation check for story familiarity on a scale of 0 to 5 (with 0 equating to no familiarity and 5 representing much familiarity with the content), scores were less than one for both stories (M = .98, SD =1.31 for the health story and M = .42, SD = .91 for the technology story). 56% of the participants reported "0" familiarity with the stories. Only 3 participants reported a "5" and these three were excluded from the study. To test for homogeneity across participants, an analysis of variance (ANOVA) detected no significant differences between the axial and network hypertext groups in pre-test measures of civic scientific literacy, the amount of time on the Web, the amount of time browsing online news, the number of either science courses or math courses and grade point average. 15 Table 1 first presents data each of the four repeated measures of text structure. The four groups are then divided by the between subject factor of network links versus the axial link condition. Network links For group, 1, situational interest, (M = 1.10, SD = 1.31) for the technology (structure building) story was significantly less than interest in the original health inverted pyramid story (M = 2.39, SD = 1.26). ANOVA indicated an F (1,78) = 121.816, p = < .001, eta .61. Situational understanding for the technology story in the structure building format (M = 28.56, SD = 9.09) was also less than the understanding of the original health text (M = 37.32, SD = 8.08). The difference was also statistically significant with F (1,78) = 1400.685, p = < .001, eta .95. These data failed to support hypotheses 1 and 2. For the second network link group, the original technology inverted pyramid story produced greater situational interest, (M = 2.31, SD =1.32) than the modified health story (M = 1.91, SD = 1.33). The difference was significant F (1,73) = 22.652, p = < .001, eta .24. H1 is not supported. Conversely, the original technology inverted pyramid story produced less situational understanding (M = 30.20, SD = 8.00) than the modified health story (M = 34.54, SD = 8.71), and this difference was significant F (1,73) = 1331.872, p = < .001, eta .95. H2 is supported. Figure 4 illustrates the trends in interest and understanding for groups 1 and 2. Axial links participants in the axial link structure produced results more consistent with what one would expect when investigating coherence in text and hypertext. technology story (M = 1.33, SD = 1.26) was less than the self-reported interest in the health story modified for coherence (M = 2.43, SD = 1.35) and this difference was significant F (1,73) =138.16, p = < .001, eta .651. Similarly, situational understanding of the original (IP) technology story (M = 27.12, SD = 8.66) was also less than the understanding of the modified health version (M = 36.85 SD = 7.84) representing a statistically significant difference F (1,73) = 1404.33 p = <.001 eta .95. Both H1 and H2 are supported. = 1.80, SD = 1.34) was greater than interest in the original health IP story (M = 1.57, SD = 1.40), and the difference was significant F (1, 73) = 43.43, p = < .001. Similarly, the modified technology story with axial links (M = 32.59 SD = 8.38) scored higher in understanding than the original health news text (M = 27.47, SD = 8.26) producing a significant difference F(1,73) = 1187.69 p = <.001. As in group 3 with the axial link condition, H1 and H2 are both supported by the results of group 4. . The means of both groups are summarized graphically in Figure 5. 16 Unlike the results from the first two network link groups, data from Specifically, for group 3, reader interest in the original (inverted pyramid) Finally, in group 4, situational interest in the technology ESB version (M 17 DISCUSSION This research proposed that unfamiliar and complex news (in this case, news about science and technology), structured in the traditional inverted pyramid with network links might reduce interest and understanding of the news content. The rationale was that such a format may limit explanation of key concepts to the audience, provide greater incoherence and impute reader familiarity for the content. Results from two stories in two link structures elucidate how message structure can have profound effects on the level of readers' understanding and interest in important news issues. Therefore, based on a rich history of research in cognitive psychology about how individuals process textual information, a claim could be made that, collectively, news reporting information about complex issues, structured for more coherence and explanation, could enhance the engagement of low-knowledge readers and their subsequent understanding of situations (terms and processes) in news. Clearly, link structure appears to play a major role in whether a given text structure is effective. Regardless of a consistent preference for health news over technology news by readers tested in this study, explanatory structure building with axial links appeared to significantly enhance situational understanding of content. One cannot, however, avoid the possible explanation from previous research that more interactivity may also affect the level of content-specific recall (Tremayne & Dunwoody, 2001). Based on this possible explanation, a post-hoc analysis was conducted on the total number of links clicked by each of the four groups 18 tested. Interesting, as represented by Figure 6, the axial hypertext structure appeared to spark more link engagement (as measured by the total number of story links clicked). Overall, participants exposed to stories with axial links were at least three times more likely to click on a link than an a participant reading the same story with a network hypertext link structure. A closer look at interactivity by story and link condition, however (Figure 7), reveals that in the axial condition (n = 149), the difference in self-reported use of the five links between the original stories (MaxialIP = .82, SD = 1.32) and the modified ESB text (MaxialESB = .69, SD = 1.23) was not statistically different F (1, 148) = 3.185, p < ns. In the network condition (n = 146), the difference in selfreported use of the five links provided in the original ESB text structure (MnetworkESB = .51, SD = .81) was more than twice the number of links used for stories in the original IP text (MnetworkIP = .24, SD = .60) resulting in a significant difference in link use F (1, 145) = 17.053, p < .001. Also, Pearson correlations of reader interest with link use revealed that the number of links clicked for the IP story was positively related to interest in the IP stories r (146) = .26, p = <. 002, and number of links used for the ESB stories was positively related to interest in ESB stories r (145) = .17, p = <. 046. Only interest in the original IP stories (where fewer clicks were used) correlated significantly with situational understanding stories r (148) = .35, p = <. 001. This suggests that although readers reported more interest in the original inverted pyramid stories (and consequently appeared to experience a deeper understanding of the inverted pyramid stories it appears that more link use in the structure 19 building (ESB) story condition meant more reader engagement. A weaker argument, based on these data, is that greater use of network links (independent of the structure building process in text) appears to inhibit situational understanding. In summary, the difference in link use for the stories with network links is significant. This significance (based on the fact that more links were used for both stories in the structure building version) may suggest that the greater use of network links resulted in less interest and less understanding of the stories with network links. If so, this suggests that the coherence of text can provide only so much benefit to a reader on the Web. If this correct, the structure of links and the corresponding interactivity related to these links would appear to be paramount to a user's interest in and understanding of news on the Web. Limitations: As with any experimental study, exposing two science and technology stories to participants in a controlled environment offers limited external validity. Although this poses a limitation to this study, it is important to place into perspective the goal of this study. The goal was not to simply measure how well the audience comprehends a news story about science and technology, but how the audience responds to unfamiliar news content using variations of text and hypertext structures. Although it could be noted that this study, like so many others, focused on college students, it is this segment of the online population that, arguably, should be of primary interest to those committed to more public engagement science and technology (Miller, 1987, 1995). Conclusions with limited knowledge about the content? Results from this study suggest that the answer is 'no," and some assumptions about the level of public understanding of content such as science and technology may be premature without first verifying the effectiveness of the message structure to engage the low-knowledge audience for deeper understanding. a story is structured textually and with hypertext links may reap substantial benefits. Without such an effort, one might be content with the assumption that news about complex issues, such as science and technology, should generally be directed to only the "science attentive public." This research suggests that opportunities may exist to increase the population of that audience. 20 Can we to assume that all news is appropriately structured for an audience Data collected in this study suggest that paying particular attention to how 21 Figure 1. van Disk's hypothetical structure of a news schema. Source: van Dijk (1988). Reprinted with permission from the publisher and author. Figure 2. Connective axial link structure(left) vs. associated network links (right). 22 Source: Engebretsen (2000). 23 Figure 3: Proposed model of reader engagement and situational understanding of complex news. Group 1: Network Links Situational Interest Situational Understanding Group 2: Network Links Situational Interest Situational Understanding Group 3: Axial Links Situational Interest Situational Understanding Group 4: Axial Links Situational Interest Situational Understanding Table 1. Within subject means of text vs. hypertext structure * = highest means per group M STORY 1 SD Tech ESB 1.31 9.09 1.10 28.56 Health ESB 1.33 8.71 1.91 *34.54 Tech IP 1.26 8.66 1.33 27.12 Health IP 1.40 8.26 1.57 27.47 24 M STORY 2 SD Health IP * 2.39 * 37.32 1.26 8.08 Tech IP * 2.31 30.20 1.32 8.00 Health ESB *2.43 *36.85 1.35 7.84 Tech ESB *1.80 *32.59 1.34 8.38 Figure 4. Situational interest and understanding with network links 25 Figure 5. Situational interest and understanding with axial links 26 \ Figure 6. Total links used by text and hypertext structure 27 28 Axial Links Network Links Figure 7. Total links used by story, text structure and hypertext structure 29 APPENDIX Benign Viruses Shine on the Silicon Assembly Line ORIGINAL New York Times version Reprinted with permission from The New York Times Company. (Page 1) Living organisms do a fine job of growing crystals, like the ones that make up abalone shells, for example. But there are lots of other inorganic materials, including those that make up semiconductors, that living things haven't gotten around to producing. That may change, though, with some help from a tiny benign virus and a professor at the Massachusetts Institute of Technology. [ Participant clicks to indicate level of interest in story (on a scale of 0-6) before proceeding to next page ] (Page 2) Taking over where nature left off, the professor, Angela M. Belcher, has induced the virus to produce, at last count, roughly 30 inorganic materials with semi conducting or magnetic properties. "We have forced organisms to grow some of the technologically interesting materials that nature hasn't had the opportunity yet to work with," said Dr. Belcher, an associate professor of materials science. Now she and her team report in the journal Science that they have selectively altered the DNA in their viruses to generate a variety of tiny wires made of magnetic and semi conducting materials. Such wires may one day be part of the extremely small circuitry in the next generation of evershrinking high-speed electronic components. "It's amazing," she said. "Not only does the virus make this nice semiconductor wire at room temperature, but all the crystals are aligned." The shape of the new wires offers not only beauty but utility as well, said William S. Rees Jr., director of the Molecular Design Institute at the Georgia Institute of Technology and currently on leave at the Department of Homeland Security in Washington. "The entire field of nanoelectronics depends upon the ability to mass produce cost-effective components," he said, "and she has opened the door to this." Most nano wires currently tend to be less than uniform in shape, he said, but Dr. Belcher has produced highly regular forms. "Hers are all the same diameters and length," he said. "It's similar to grass growing in your front lawn when it's well manicured and each blade is the same height." Dr. Belcher's team uses the virus as a temporary scaffolding on which the crystals grow. The viruses are first altered by the insertion of a few amino acid chains, called peptides, so that they attract a particular material like zinc sulfide or cadmium sulfide. As the material starts to form a crystal on the virus, Dr. Belcher adds elemental components of zinc sulfide or cadmium sulfide in a solution, and the crystals grow into individual nanowires. Then the virus is baked away. It is all a matter of affinity, molecular recognition and genetic programming, Dr. Belcher said. "We programmed the virus to grow a particular material at a particular length," she said. "Then we burned off the virus and were left with single-crystal semiconductor wires." "Viruses are nice stuff to work with," she said, but she and her colleagues are starting to use the technique with other organisms, too. Thomas N. Theis, director of physical sciences at I.B.M. Research in Hawthorne, N.Y., describes Dr. Belcher's work as part of a relentless drive toward miniaturization of complex electronic structures, and predicts that it will have a big impact. "This kind of chemistry could revolutionize many manufacturing processes by making them less expensive," he said. Dr. Belcher has jointly founded a company, Semzyme, with Evelyn L. Hu, a professor of electrical engineering at the University of California at Santa Barbara, to try to bring the technology to the marketplace. Dr. Belcher started her research into this method for making nanowires in early 2000, when she took a library of viruses that were identical except for one DNA insert coded for the production of a random peptide. She wanted to see whether, by virtue of the peptides they produced, some of those viruses would attract and bind with semiconducting materials. Most had no effect and were discarded. When they did find a promising virus, copies of it were made by inserting it into a living bacterial cell. "Then we had a population of a virus with some affinity to a semiconductor," she said. The group tested for attraction under increasingly stringent conditions, replicating successful candidates again and again. The procedure gradually grew more streamlined. "By now it only takes us two weeks," Dr. Belcher said. That accomplished, she began using the viruses to create nanowires. The process is independent of the virus used. "This is actually a genetic tool kit for growing and organizing nanowires for these semiconducting and magnetic materials," Dr. Belcher said. Dr. Belcher pointed out that the self-assembling her materials did was quite different from the dreaded self-replication so often evoked by foes of nanotechnology. "These materials don't replicate themselves," she said. They can be programmed only to assemble in a particular place in a particular shape. 30 31 Benign Viruses Shine on the Silicon Assembly Line Modified ESB VERSION (Page 1) Living organisms do a fine job of growing crystals, like the ones that make up some seashells, for example. But there are lots of other materials, including those that make up semiconductors, that living things cannot yet produce. That may change, though, with help from a tiny particle that lives as a parasite in plants and animals. The particle is a harmless virus. [ Participant clicks to indicate level of interest in story (on a scale of 0-6) before proceeding to next page ] (Page 2) Professor Angela M. Belcher and her research team at the Massachusetts Institute of Technology report in the journal Science that they have modified the genetics in viruses to generate a variety of tiny wires called nanowires, which are made of magnetic and semiconducting materials. Nanotechnology is a collective term that refers to developments on the nanometer scale, or one millionth of a millimeter in size. Such tiny wires may one day be part of the small circuitry in the next generation of ever-shrinking high-speed electronic components. "It's amazing," Professor Belcher said. "Not only does the virus make this nice semiconductor wire at room temperature, but all the crystals are aligned." Taking over where nature left off, the researchers, has caused the virus to produce, at last count, about 30 materials that have semiconducting or magnetic properties. Dr. Belcher started her research into this method for making nanowires in early 2000, when she experimented with a library of viruses that were nearly identical. She wanted to see whether, some of the viruses would attract and bind with semiconducting materials. Most had no effect and were discarded. However, when researchers did find a promising virus, copies of the virus were made. "Then we had a population of a virus with some affinity to a semiconductor," she said. The group tested for attraction under strictly controlled conditions, replicating successful candidates again and again. The procedure gradually grew more streamlined. "By now, it only takes us two weeks," Dr. Belcher reported. That accomplished, Dr. Belcher, an associate professor of materials science, began using the viruses to create nanowires. The production process is independent of the virus used. "This is actually a genetic tool kit for growing and organizing nanowires for these semiconducting and magnetic materials," Dr. Belcher said. She pointed out that the process her materials completed was quite different from the selfreplication process often noted by opponents of nanotechnology. "These materials don't replicate themselves," she said. They can be programmed only to assemble in a particular place and a particular shape. "We have forced organisms to grow some of the technologically interesting materials that nature hasn't had the opportunity yet to work with," said Dr. Belcher. Most nanowires currently tend to be different in shape, said William S. Rees Jr., director of the Molecular Design Institute at the Georgia Institute of Technology, but Dr. Belcher has produced highly regular forms."Hers are all the same diameters and length," said Rees. "It's similar to grass growing in your front lawn when it's well manicured and each blade is the same height." It is all a matter of similarity recognition and programming, Dr. Belcher said. "We programmed the virus to grow a particular material at a particular length," she said. "Then we burned off the virus and we're left with single-crystal semiconductor wires." 32 "Viruses are nice stuff to work with," Dr. Belcher said, but she and her colleagues are starting to use the technique with other organisms, too. Thomas N. Theis, director of physical sciences at I.B.M. Research in Hawthorne, N.Y., describes Dr. Belcher's work as part of a relentless drive toward miniaturization of complex electronics and predicts that it will have a big impact. "This kind of chemistry could revolutionize many manufacturing processes by making them less expensive," he said. The shape of the new wires offers not only beauty but utility as well, said William Rees "The entire field of nanoelectronics depends upon the ability to mass produce cost-effective components," Rees said, "and she has opened the door to this." Dr. Belcher's team uses the virus as a platform on which the crystals grow. The viruses are first altered so that they attract a particular material. As the material starts to form a crystal on the virus, Dr. Belcher adds a solution of elemental components and the crystals grow into individual nanowires. Then the virus is baked leaving only the wires. In the future, Dr. Belcher hopes to make materials that are not only self-assembling but selfhealing, too. "You design a circuit and if there's a break, it can heal itself," she said. Dr. Belcher has jointly founded a company, Semzyme, with Evelyn L. Hu, a professor of electrical engineering at the University of California at Santa Barbara, to try to bring the technology to the marketplace. A Budding Tumor Unmasked by the Vessels That Feed It ORIGINAL New York Times version Reprinted with permission from The New York Times Company. (642 words) (Page 1) For a tumor to grow, it needs a good supply of blood, which it gets by switching on the body's process of blood-vessel making, known as angiogenesis. Researchers are trying to develop drugs to inhibit angiogenesis as a way of fighting tumors, but they need ways to make sure the inhibitors, which have so far had mixed results, are effective early in therapy, long before the vessels affect the tumor itself. [ Participant clicks to indicate level of interest in story (on a scale of 0-6) before proceeding to next page ] (Page 2) One computer-based imaging technology may have the potential to detect changes in the blood vessels in and around tumors, signaling the power of a particular inhibitor. The technique, an adaptation of conventional magnetic resonance imaging, or M.R.I., captures up to a thousand images taken serially of a tumor before, while and after dye is introduced. Software analyzes the images, characterizing what the dye (called a contrast agent) has revealed on its journey into and out of the tumor - leakiness, for example, a hallmark of vessels that are being formed. The technology, called dynamic contrast-enhanced M.R.I., is largely confined to research institutions conducting clinical trials and should be considered experimental, said Dr. Peter L. Choyke, a radiologist and chief of M.R.I. at the National Institutes of Health in Bethesda, Md. For the past three years, Dr. Choyke has been working on refining the technique in collaboration with 33 Dr. Michael Knopp, a radiologist at the Ohio State University Comprehensive Cancer Center, and other researchers. Dynamic contrast-enhanced M.R.I. is one of several technologies that provide noninvasive images of the creation of new blood vessels in animals and humans. It has shown particular potential in analyzing extremely small blood vessels, Dr. Choyke said, and might therefore one day find wide use in identifying tumors and monitoring therapies that inhibit angiogenesis. The process yields a loop of images that can be viewed one after another. "This process reveals a more complete map of regional vascular properties of a tumor than single snapshots taken with M.R.I. could," Dr. Choyke said. Characterized by chaotic flow patterns and tortuous paths, blood vessels in tumors are markedly different from those in healthy tissue. Leaks are common. "Tumor vessels are full of holes, and that allows the contrast agent to leak out readily," Dr. Choyke said. "That's one of the things we measure." A judgment on how aggressive a tumor is can be based in part on this permeability, he said. "You can characterize a tumor as highly vascular - that is, amenable to an angiogenic inhibitor," Dr. Choyke said, in contrast to a lesion that does not have many blood vessels. The process might be helpful in determining whether a biopsy is necessary. Dr. Choyke cited a woman with a high risk for breast cancer whom he had examined recently. "We saw a little area in the breast, a nodule," he said. "But it didn't enhance with the contrast agent to suggest that it was a highly permeable vascular area, so it didn't have a pattern suggesting malignancy." In such a case, he said, it would be possible to postpone a biopsy. Dr. Knopp said that dynamic contrast-enhanced M.R.I. might prove useful in preventing incorrect biopsy results. "We are recognizing that tumors are not a single entity, but a heterogeneous array of features," he said. Dynamic contrast-enhanced M.R.I. can help guide where the biopsy is performed. "If you have a bulky tumor, we can show where there is active tumor tissue and areas not as representative of the tumor." In the experimental method described by Drs. Knopp and Choyke in recent papers, a dye is injected and scanning is repeated until about 10 minutes of data have accumulated. Algorithms analyze the images and map how permeable the blood vessels are, how much blood is flowing and the vessels' volume. Workstations with high-resolution displays can present colorized images of the data in views that create a composite of many scans. A Budding Tumor Unmasked by the Vessels That Feed It Modified ESB VERSION (638 words) (Page 1) For a tumor to grow in your body, it needs blood, which tumors obtain from your body's ability to make blood vessels. Researchers are trying to stop tumors with drugs that stop the growth of blood vessels, and computer images may show if the drugs are working. The process might help in determining whether a surgical biopsy in needed, according to Dr. Peter L. Choyke of the National Institutes of Health. [ Participant clicks to indicate level of interest in story (on a scale of 0-6) before proceeding to next page ] 34 (Page 2) Dr. Choyke cited a woman with a high risk for breast cancer whom he had examined recently. "We saw a little area in the breast," he said. "It didn't have a pattern suggesting malignancy." In such a case, Dr. Choyke said, it would be possible to postpone a surgical biopsy. Dr. Michael Knopp at the Ohio State University Comprehensive Cancer Center said that the computer imaging might prove useful in preventing incorrect biopsy results. "We are recognizing that tumors are not a single entity, but a heterogeneous array of features," he said. This imaging technology can help guide where the biopsy is performed. "If you have a bulky tumor, we can show where there is active tumor tissue and areas not as representative of the tumor." The computer images, taken as dye is injected into the body's tissue can show the journey of the dye into and out of a tumor. Up to one thousand computer images taken before, during and after the dye is introduced into the body can indicate if new bloods vessels are being formed. In the experimental method described by Drs. Knopp and Choyke in recent papers, the dye is injected and scanning is repeated until about 10 minutes of data have accumulated. The images are analyzed for how porous the blood vessels are, how much blood is flowing and the vessels' volume. High-resolution color images create a movie of many scans. "This process reveals a more complete map of regional vascular properties of a tumor than single snapshots," Dr. Choyke said. Characterized by chaotic flow patterns, blood vessels in tumors are markedly different from those in healthy tissue. Leaks are common. "Tumor vessels are full of holes, and that allows the contrast agent to leak out readily," Dr. Choyke said. "That's one of the things we measure." The technology, called dynamic contrast-enhanced M.R.I. is one of several technologies that provide images of the creation of new blood vessels in animals and humans. The technology has shown particular potential in analyzing extremely small blood vessels, Dr. Choyke said, and might therefore one day find wide use in identifying tumors and monitoring therapies that creation of blood vessels. The technology is not yet in wide use, partly, Dr. Choyke said, because different research groups use different software to analyze their data. He expects a consensus to emerge in the next few years as standard software becomes widely available and research groups move toward a universally accepted way of analyzing the data. Dynamic contrast-enhanced M.R.I. is largely confined to research institutions conducting clinical trials and should be considered experimental, said Dr. Peter L. Choyke. For the past three years, Dr. Choyke has been working on refining the technique in collaboration with Dr. Knopp, at the Ohio State University Comprehensive Cancer Center, and other researchers. "Dynamic enhanced-contrast M.R.I. has the greatest potential - as yet unrealized - to monitor therapy early on," Dr. Choyke said. He expects that when drugs stop new blood vessels from forming, the M.R.I. will reveal changes in blood vessels that occur before the tumor responds to the changes by shrinking or stabilizing. But Dr. Michael O'Reilly, who did pioneering research with Dr. Judah Folkman at Children's Hospital in Boston said that even if such monitoring became possible, considerable research would still be needed. 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